2019
September 23rd
September 28th
Vignette
International course
Computational Systems Biology of Cancer
Single Cell Analysis - 2nd Edition

Systems biology approaches help to analyse molecular mechanisms in silico The diversity across tumors from different patients and even across cancer cells from the same patient makes the picture very complex, making the fundamental aim to find a common mechanism for therapeutic targeting of cancer becomes unpractical. Therefore, the idea of ‘personalized’ or ‘precision’ medicine has been suggested, aiming to find tailored treatment regimen for each patient according to the individual genetic background and tumor molecular profile. This attempt, although ambitious, is achievable thanks to sufficient molecular characterization of cancers accumulated using high-throughput technologies. However, despite availability of cancer high-throughput (omics) data, they are not fully exploited to provide the clue on deregulated mechanisms that would guide better patients stratification and to specific treatment in cancer.

We invited leading speakers from different fields in cancer systems biology, especially from the field of system biology of single cell data in cancer. The invited speakers will expose various approaches for single cell data analysis and interpretation using cell type-specific pathways resources; tools to study molecular mechanisms of cancer using signalling networks together with omics data from single cells and to associating it to clinical data. In addition, drug sensitivity prediction algorithms, biomarkers and cancer drivers identification; patient stratification approaches; application of mathematical modelling, machine learning and image analysis in cancer approaches with focus on single cell data will be demonstrated.

 

Keynote speakers

Peter Kharchenko (Harvard Medical School, Boston, USA)

Cours en English
4 ECTS
Registration deadline

Intervenants

Augustin Luna (Harvard Medical School, Boston, USA)

Reinhard Schneider (Luxembourg University, Luxembourg)

Luca Pinello (Harvard Medical School, Boston, USA)

Denis Thieffry (IBENS-ENS, Paris, France)

Julio Saez-Rodriguez (EMBL-EBI, Hinxton, UK)

Vassili Soumelis (INSERM, Paris, France)

Andrei Zinovyev (Institut Curie, Paris, France)

Jérome Galon (Cordeliers Research Center, Paris, France)

Estelle Duprez (CRCM, Marseille, France)

Leïla Perié (Institut Curie, Paris, France)

Lodewyk Wessels (National Cancer Institute, Amsterdam, The Netherlands)

Kathleen Marchal (Ghent University, Ghent, Belgium)

Thomas Walter (Centre for Computational Biology, MINES ParisTech, Paris, France)

Antoine De Weck (Novartis, Basel, Switzerland)

Andrew Teschendorff (University College London - London, UK)

Thomas Höfer (GKFZ - Allemagne)

Veronique Thomas-Vaslin (Sorbonne University - FR)

Loredana MARTIGNETTI (Institute Imagine - FR)

Ioannis XENARIOS (UNIL - CH)

Ido AMIT (The Weizmann Institute of Science - IL)

Philip STEGMAIER ( geneXplain - DE)

Plus d’informations

Objectifs

The objective of the course is to promote better integration of computational approaches into biological and clinical labs. We aim to help participants to improve interpretation and use of omics data that nowadays are accumulated in any biological or medical lab.  This year, the course will particularly focus on SysBio approaches for single cell data analyses. We will review current methods and tools for the analysis and interpretation of single cell data, along with concrete applications related to cancer. In particular, we will emphasize the role of single cell data research for understanding the heterogeneity of tumor and its microenvironment.

Infos pratiques

The course will contain the following topics:

Deciphering and modelling of biological networks involved in cancer

-Comprehensive signalling/metabolic networks and pathway databases in cancer

-Cell type-specific pathways resources

-Single cell omics data visualisation, analysis and interpretation

-Network inference from big data

-Mathematical modelling of cancer molecular mechanisms

Big data: single cell and clinical data analysis

-Inferring and analysing tumour heterogeneity from single cell data

-Prediction of response to treatment

-Single cell data for more precise patients’ stratification

-Bioimage informatics as high‐content screening in single cell research

-Spatial transcriptomics in organs

Career development workshop (half a day on Saturday)

Introduction to career development opportunities in computational systems biology of cancer. Presentation of career paths and assistance of students by (round tables):

-Invited speakers

-Pharma representatives

-Scientific editing bodies

Informations pratiques détaillées

Career development workshop (half a day on Saturday)

Introduction to career development opportunities in computational systems biology of cancer. Presentation of career paths and assistance of students by (round tables):

-Invited speakers

-Pharma representatives

-Scientific editing bodies

Infos sur les ECTS

The course will be validated by 4 ECTS for Master and PhD students.

Comité scientifique

Laurence CALZONE Institut Curie – INSERM U900, Paris, France

Tatiana POPOVA Institut Curie – INSERM U830, Paris, France

Andrei ZINOVYEV Institut Curie – INSERM U900, Paris, France

Partenaire(s)

Selection result
July 31st, 2019
There is no registration fee for this course

Registration is mandatory to all categories of attendees.

No registration fees are requested.

Lunches, coffee breaks, opening reception and farewell buffet will be provided for free during the course.

Note that the accommodation and travel expenses must be arranged with the home institution of the attendees.

Effectif maximum

Nombre de places max.
80 people

Nos sponsors

Organisation

  • U900 - Cancer and Genome: Bioinformatics, Biostatistics and Epidemiology of Complex Systems

Emmauel BARILLOT Institut Curie - INSERM U900, Paris, France

Inna KUPERSTEIN Institut Curie - INSERM U900, Paris, France  

Vassili SOUMELIS Institut Curie - INSERM U932, Paris, France  

Denis THIEFFRY Institut de Biologie de l'École Normale Supérieure, Paris, France

Thomas‎ WALTER Centre of Computational Biology, MINES - ParisTech, Paris, France

Lieu
Bâtiment de Biologie du Développement - Amphithéâtre
11-13 Rue Pierre et Marie Curie, 75248 Paris cedex 05
Paris - France